Qiime1
Instructions: http://qiime.org/install/install.html
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod u+x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.shWhen installing Miniconda it will prompt you for a pathname if not it
will default to $HOME/miniconda3 if you started from your home directory.
Python is lots of small files so it is best to use /DFS-B/DATA on the new system,
in my case /DFS-B/DATA/staff/santucci/miniconda3 or /DFS-B/DATA/<group/pi-name>/<username>.
Results in updating:
/export/home/santucci/.bashrc
Original .bashrc can be found:
/export/home/santucci/.bashrc-miniconda3.bak
# source .bashrc
. ~/.bashrc
# update your conda environment
conda update -n base conda
# create virtual environment
conda create -n qiime1 python=2.7 qiime matplotlib=1.4.3 mock nose -c bioconda
# activate qiime1 in python virtual environment
source activate qiime1
# deactive qiime1 in python virtual environment
source deactivate
# destroy/revert back to original conda environment
conda remove --name qiime1 --all